yaml2sbml-dev / yaml2sbml

Tool to convert an ODE model specified in the YAML format to SBML.
https://yaml2sbml.readthedocs.io/en/latest/
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option to have observables as assignments in yaml2sbml call #98

Closed jvanhoefer closed 3 years ago

jvanhoefer commented 3 years ago

As @dweindl pointed out today, It might be nice for COPASI users to have the option to add observable definition as assignments, so that they are still represented in the SBML somewhere, e.g. via an parameter observable_<observable_id>, that gets the right hand side of the observable assigned. This is only done, if a flag in the yaml2sbml function is set to True.

jvanhoefer commented 3 years ago

was added in v0.2.2