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yanailab / celseq2

Generate the UMI count matrix from CEL-Seq2 sequencing data
https://yanailab.github.io/celseq2/
BSD 3-Clause "New" or "Revised" License
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Missing input files for rule COOK_ANNOTATION: #46

Open iichelhadi opened 1 year ago

iichelhadi commented 1 year ago

Hi guys, I encounter this error when performing the dry-run. I am not sure how to resolve this issue.

MissingInputException in line 507 of ./celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Missing input files for rule COOK_ANNOTATION:
wonderful_experiment_table.txt

Any help would be greatly appreciated.

iichelhadi commented 1 year ago

I may have resolved the issue by providing the full path to the wonderful_experiment_table.txt file but now have an new error

WildcardError in line 396 of /celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Wildcards in params cannot be determined from output files. Note that you have to use a function to deactivate automatic wildcard expansion in params strings, e.g., `lambda wildcards: '{test}'`. Also see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#non-file-parameters-for-rules:
'line'

Any help would be greatly appreciated.