Can't install the package

[ChristopheBourges]

Hello, I came across your publication on DiffChIPL and would like to try it out! I'm having trouble though to install it:

• if I try through RStudio with CRAN I get this error: Warning in install.packages : package ‘DiffChIPL’ is not available (for R version 4.0.0)
• if I try with install_github("yancychy/DiffChIPL") I get this:

  
  Error: Failed to install 'unknown package' from GitHub:
  HTTP error 404.
  No commit found for the ref master
  Did you spell the repo owner (`yancychy`) and repo name (`DiffChIPL`) correctly?
  If spelling is correct, check that you have the required permissions to access the repo.

I've tried with R versions 4.0, 4.1 and 4.2.

Please let me know if you have an idea how to solve this!
Thank you,
Chris

[yancychy]

Hi Chris, I will fix it today. Please download the package to your computer and install it in Rstudio directly. I just install it in my computer. At first, I failed. But after I installed some packages, it worked.

Best, Yang

[yancychy]

Hi Chris, I tested it in a new OS which has only some packages installed. The error is as follows:

Installing package into ‘/Users/chens19/Library/R/x86_64/4.1/library’ (as ‘lib’ is unspecified) ERROR: dependencies ‘limma’, ‘edgeR’, ‘GenomicRanges’, ‘Rsamtools’, ‘bamsignals’, ‘SGSeq’, ‘aomisc’ are not available for package ‘DiffChIPL’ *removing ‘/Users/chens19/Library/R/x86_64/4.1/library/DiffChIPL’ Warning messages: 1: packages ‘aomisc’, ‘SGSeq’, ‘bamsignals’, ‘Rsamtools’, ‘GenomicRanges’, ‘edgeR’, ‘limma’ are not available for this version of R

Then I just installed these pacakges and reinstall DiffChIPL. For example:

BiocManager::install("SGSeq", lib="/Users/chens19/Library/R/x86_64/4.1/library/")

[ChristopheBourges]

Hi Yang,

Thanks a lot for checking this, I will try installing the other packages first as you suggest.

BW Chris