Is FASTQ output format supported?

yangao07 / abPOA

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

MIT License

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Is FASTQ output format supported? #53

Closed jiaan-yu closed 9 months ago

jiaan-yu commented 9 months ago

Hi, We love your tool. It is really good! I've tried to use it on fastq files with quality score weight (-Q), since this feature is available since 1.4.1. But the output I get is still in fasta format. Is it possible to get output in fastq format? Is this a feature for future development? Cheers!

yangao07 commented 9 months ago

What is your full command?

jiaan-yu commented 9 months ago

Sorry my fault. I got fastq output with the following command: abpoa -Q -r 5 $fastq Let me close this issue... Cheers