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yangfangs / physpetools

PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
https://yangfangs.github.io/physpetools/
GNU General Public License v3.0
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An issue with muscle #4

Open camilogarciabotero opened 4 years ago

camilogarciabotero commented 4 years ago

Hi,

I followed the next steps and got an issue with apparently muscle in the pipeline execution:

  1. Installed PhySpeTree with pip install PhySpeTree in my base conda env.

  2. Create a dir and a text file with the "organism_example_list.txt" file provided in the repo.

  3. Run the PhySpeTree -i organism_example_list.txt line as suggested in the README and got the following error:

/miniconda3/lib/python3.7/site-packages/physpetool/softwares/muscle: cannot execute binary file

Finally got the following messages:

Screen Shot 2020-01-23 at 4 09 32 PM

yangfangs commented 4 years ago

Hi, Camilo

I am sorry PhySpeTree not pass test with miniconda environment.

PhySpeTree design for linux operating system. If you are using PhySpeTree in the window OS we recommend using docker technology for installation.