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yanhui09 / laca

A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)
GNU General Public License v3.0
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More details regarding taxonomy DB #6

Open aistBMRG opened 3 months ago

aistBMRG commented 3 months ago

Thanks for developing this tool -- I am eager to try it out.

Now, it seems that a taxonomy database is a requirement for laca init. Would it be possible to clarify the format of this database (e.g., fasta with taxonomy strings in the sequence header ...?) -- I searched for some information but could not readily find what I was looking for?

Thanks!

Dieter

yanhui09 commented 3 months ago

You only need to define the path database_dir (where you want to place the database file) in the config.yaml. And run the workflow. It will install the database for the first use. ;)

aistBMRG commented 3 months ago

Thanks for the information. I will proceed accordingly.

Best.