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yanwu2014 / swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
BSD 3-Clause "New" or "Revised" License
103 stars 20 forks source link

SWNE plotting on Tabular Data #19

Closed Saini-96 closed 5 years ago

Saini-96 commented 5 years ago

Hi Team,

I have followed the steps for plotting SWNE on genome data. Now i want to plot SWNE on my custom dataset which is nothing but Structured Tabular data. So is there any plugin or module for plotting SWNE on my custom dataset? Please help me out with this.

Thanks in advance

yanwu2014 commented 5 years ago

Hi Saini, sorry for the late reply. Can you give me an example of what your structured tabular data looks like?

Saini-96 commented 5 years ago

Hi Yanwu,

Like my dataset has more than 13 cloumns, where some of the columns contains string values, some of the coulmns contains Dates & some of the coulmns has numerical value. It is Salesforce dataset. Where we will find out the customer late payment related analysis.

Thanks & Regards, Rahul Saini

On Sat 4 May, 2019, 2:56 AM Yan Wu <notifications@github.com wrote:

Hi Saini, sorry for the late reply. Can you give me an example of what your structured tabular data looks like?

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yanwu2014 commented 5 years ago

Ah unfortunately SWNE will only work on numerical data, it doesn't work for categorical variables

Saini-96 commented 5 years ago

Ok got it but didn't find any plugin or module by making use of which I can use SWNE on numerical data. I saw your GitHub page where SWNE was implemented for geonom data. So please help me out on how to implement SWNE on numerical data.

Regards, Rahul Saini

On Mon 6 May, 2019, 10:33 PM Yan Wu <notifications@github.com wrote:

Ah unfortunately SWNE will only work on numerical data, it doesn't work for categorical variables

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yanwu2014 commented 5 years ago

Gotcha, so if you want to run SWNE on a numerical matrix you can use the RunSWNE wrapper function on a sparse or dense matrix.

Let me know if that helps!

Saini-96 commented 5 years ago

Ok will try & let you know One more thing we don't require cisTopic or serut object what you used for genomics data. Simply we have to fetch numerical dataset & run RunSWNE on that, am I right?

On Mon 6 May, 2019, 11:01 PM Yan Wu <notifications@github.com wrote:

Gotcha, so if you want to run SWNE on a numerical matrix you can use the RunSWNE wrapper function on a sparse or dense matrix.

Let me know if that helps!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/yanwu2014/swne/issues/19#issuecomment-489705201, or mute the thread https://github.com/notifications/unsubscribe-auth/AI5DJ4MWCXQASRRQ7EQOXP3PUBTPJANCNFSM4HHVCTGA .

yanwu2014 commented 5 years ago

Yes you can use RunSWNE on any numerical matrix.

yanwu2014 commented 5 years ago

Closing this for now, let me know if you run into any additional issues!