search

yanwu2014 / swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
BSD 3-Clause "New" or "Revised" License
104 stars 20 forks source link

SWNE plotting of samples subsets #4

Closed terooatt closed 6 years ago

terooatt commented 6 years ago

I have merged different samples using seurat and then run SWNE. What would be the best way to show a subset (i.e. different samples) in the SWNE plot, while maintaining the overall structure of the SWNE plot. thanks

yanwu2014 commented 6 years ago

You should be able to use the samples.plot parameter in PlotSWNE to plot a subset of the samples. Just specify the names of the samples you'd like to plot. Let me know if that works for you!

terooatt commented 6 years ago

Sorry for the late reply. It worked well. Cheers!