When I summarize the output, an IndexError occurs as below.What's the problem?
``summarize_miso --summarize-samples gene-psi-output summaries
MISO (Mixture of Isoforms model)
Summarize MISO output to get Psi values and confidence intervals.
Use --help argument to view options.
Loading events from: /home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/test-output/gene-psi-output
Writing summary to: /home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/test-output/summaries/summary/gene-psi-output.miso_summary
Traceback (most recent call last):
File "/home/wxzheng/bin/myenv/bin/summarize_miso", line 11, in
load_entry_point('misopy==0.5.3', 'console_scripts', 'summarize_miso')()
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/summarize_miso.py", line 93, in main
use_compressed=use_compressed)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/samples_utils.py", line 309, in summarize_sampler_results
output_fields = format_credible_intervals(event_name, samples)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/credible_intervals.py", line 22, in format_credible_intervals
cred_interval = compute_credible_intervals(samples)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/credible_intervals.py", line 54, in compute_credible_intervals
cred_interval = [samples[lower_bound_indx], samples[upper_bound_indx]]
IndexError: only integers, slices (:), ellipsis (...), numpy.newaxis (None) and integer or boolean arrays are valid indices
When I summarize the output, an IndexError occurs as below.What's the problem? ``summarize_miso --summarize-samples gene-psi-output summaries MISO (Mixture of Isoforms model) Summarize MISO output to get Psi values and confidence intervals. Use --help argument to view options.
Loading events from: /home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/test-output/gene-psi-output Writing summary to: /home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/test-output/summaries/summary/gene-psi-output.miso_summary Traceback (most recent call last): File "/home/wxzheng/bin/myenv/bin/summarize_miso", line 11, in
load_entry_point('misopy==0.5.3', 'console_scripts', 'summarize_miso')()
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/summarize_miso.py", line 93, in main
use_compressed=use_compressed)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/samples_utils.py", line 309, in summarize_sampler_results
output_fields = format_credible_intervals(event_name, samples)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/credible_intervals.py", line 22, in format_credible_intervals
cred_interval = compute_credible_intervals(samples)
File "/home/wxzheng/bin/myenv/lib/python2.7/site-packages/misopy/credible_intervals.py", line 54, in compute_credible_intervals
cred_interval = [samples[lower_bound_indx], samples[upper_bound_indx]]
IndexError: only integers, slices (
:), ellipsis (...), numpy.newaxis (None) and integer or boolean arrays are valid indices