Fixed crashing on alignment files without sequence data

yarden / MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

http://genes.mit.edu/burgelab/miso/index.html

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Open romansloutsky opened 7 years ago

romansloutsky commented 7 years ago

@yarden #112

While I was at it, I replaced pysam.Samfile with pysam.AlignmentFile everywhere I found it.

romansloutsky commented 7 years ago

It looks like the continuous integration build fails because pip install pysam fails under python 2.6, unrelated to this bugfix.