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yarden / MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
http://genes.mit.edu/burgelab/miso/index.html
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Alternative Splicing Events annotations for GRCh38. #123

Open edkonyakhina opened 6 years ago

edkonyakhina commented 6 years ago

Hello! I use GRCh38 reference in my work. Could you provide Alternative Splicing Events annotations for this reference or tell how can I make it? I need annotations for Intron Retention.

Many thanks, Evgeniya

rdmorin commented 5 years ago

We were planning to run liftOver to generate these from the hg19 versions but would rather not have to do that. Any timeline on a solution to this or is it not currently planned?

husamia commented 4 years ago

I think you might be better off building it yourself with index_gff and download the gff3 from the table browser. And may not work on entire genome due to issues, So pick genes that you interested in. I found that the hg19 annotation were wrong at best and not complete.

CharlaChai commented 1 year ago

Does anyone has done the annotation file before or could you please share some experiences with me to chose the suitable one?