obenno
commented
5 years ago Hi Sneha,
Could you try to install misopy via bioconda and see if it fix the problem?
Bests, obenno
On Sun, Feb 24, 2019 at 1:01 AM sneha100895 notifications@github.com wrote:
Hi,
I am trying to use MISO to look for alternative splicing events. I have paired-end RNA-seq data. I have created the index for gff annotations and calculated the mean and standard deviation for the paired end reads. When I try to run miso, I get the following error:
ValueError: numpy.dtype has the wrong size, try recompiling. Expected 88, got 96
This is the code I'm using: miso --run indexed_gff ../index/ConAc_A2-11D.sorted.bam --output-dir MISO_output --read-len 98 --paired-end 202.5 74.7 --settings-filename /project/uml_frederic_chain/Daphnia/MISO/miso_settings.txt --use-cluster
The bam file and its index are in the same directory Nd I'm using numpy version 1.9.2
Could you please let me let me know what the problem might be?
Thank you, Sneha
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/yarden/MISO/issues/133, or mute the thread https://github.com/notifications/unsubscribe-auth/AF1oxO-SnSs31U51LAVrmfCPUEDKeu2xks5vQXQDgaJpZM4bOCzH .
Hi,
I am trying to use MISO to look for alternative splicing events. I have paired-end RNA-seq data. I have created the index for gff annotations and calculated the mean and standard deviation for the paired end reads. When I try to run miso, I get the following error:
ValueError: numpy.dtype has the wrong size, try recompiling. Expected 88, got 96
This is the code I'm using: miso --run indexed_gff ../index/ConAc_A2-11D.sorted.bam --output-dir MISO_output --read-len 98 --paired-end 202.5 74.7 --settings-filename /project/uml_frederic_chain/Daphnia/MISO/miso_settings.txt --use-cluster
The bam file and its index are in the same directory Nd I'm using numpy version 1.9.2
Could you please let me let me know what the problem might be?
Thank you, Sneha