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yarden / MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
http://genes.mit.edu/burgelab/miso/index.html
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Installing and running miso #147

Open Oliverfeudj opened 1 year ago

Oliverfeudj commented 1 year ago

Hello I am trying to run miso but I am getting this error after having installed it successfully

debian@username:~$ miso Traceback (most recent call last): File "/home/debian/.local/bin/miso", line 5, in from misopy.miso import main File "/home/debian/.local/lib/python3.7/site-packages/misopy/miso.py", line 62 print "MISO (Mixture of Isoforms model)" ^ SyntaxError: invalid syntax

margaretwoodhouse commented 1 year ago

I'm having the same issue. I used

pip install --user misopy

Edit: I realized that the instructions say for python 2.6 and above, but that does NOT include python3.

Oliverfeudj commented 1 year ago

You can install it through a conda environment that you can create with python 2.6 or 2.7 Miso apparently doesn't support python 3.

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