search

yarden / MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
http://genes.mit.edu/burgelab/miso/index.html
132 stars 74 forks source link

RuntimeWarning: Long {deleted, inserted} alignment #151

Open jma1991 opened 3 months ago

jma1991 commented 3 months ago

The nf-core/rnasplice pipeline is failing on the MISO module when run on a large test data. The error reported is:

Command error: /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281 pysplicing.MISO_ALGO_REASSIGN) /usr/local/lib/python2.7/site-packages/misopy/miso_sampler.py:322: RuntimeWarning: Long inserted alignment at pysplicing/src/solve.c:291 pysplicing.MISO_ALGO_REASSIGN)

I saw a similar issue #132 but the link in the response is no longer working.