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yarden / MISO

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
http://genes.mit.edu/burgelab/miso/index.html
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Cannot load misopy after installing to staged python 2.7 location using pip #69

Closed kotoroshinoto closed 10 years ago

kotoroshinoto commented 10 years ago

-bash-4.1$ pip2 install misopy Requirement already satisfied (use --upgrade to upgrade): misopy in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages/misopy-0.4.9-py2.7-linux-x86_64.egg Requirement already satisfied (use --upgrade to upgrade): matplotlib in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from misopy) Requirement already satisfied (use --upgrade to upgrade): numpy>=1.5.0 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from misopy) Requirement already satisfied (use --upgrade to upgrade): scipy>=0.9.0 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from misopy) Requirement already satisfied (use --upgrade to upgrade): pysam>=0.6.0 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from misopy) Requirement already satisfied (use --upgrade to upgrade): six>=1.3 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from matplotlib->misopy) Requirement already satisfied (use --upgrade to upgrade): python-dateutil in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from matplotlib->misopy) Requirement already satisfied (use --upgrade to upgrade): pyparsing>=1.5.6 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from matplotlib->misopy) Requirement already satisfied (use --upgrade to upgrade): nose>=0.11.1 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from matplotlib->misopy) Requirement already satisfied (use --upgrade to upgrade): mock in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from matplotlib->misopy) Requirement already satisfied (use --upgrade to upgrade): cython>=0.20.1 in /UCHC/HPC/Everson_HPC/python-2.7/lib/python2.7/site-packages (from pysam>=0.6.0->misopy)

import pysam import six import nose i>>> import cython import scipy

just to show you those load

import misopy Traceback (most recent call last): File "", line 1, in ImportError: No module named misopy import pysplicing Traceback (most recent call last): File "", line 1, in ImportError: No module named pysplicing

kotoroshinoto commented 10 years ago

had pip uninstall and installed fresh, it appears to have worked this time. I don't know why it didn't before.

yarden commented 10 years ago

Great!