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yatisht / usher

Ultrafast Sample Placement on Existing Trees
MIT License
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Support Diff file from MAPLE #260

Closed yceh closed 1 year ago

yceh commented 1 year ago

Diff file from MAPLE can now be used with reference FASTA and a Newick tree input. Fix extra N in matUtils extract.

yatisht commented 1 year ago

This is really cool. FYI, @NicolaDM.

russcd commented 1 year ago

@AngieHinrichs and @lilymaryam may also want to take a look at this.

yceh commented 1 year ago

By the way, transposed VCF ( https://github.com/yatisht/usher/blob/master/src/matOptimize/transpose_vcf/transposed_vcf.md ) is better supported than the Diff file. It is essentially a block gzipped binary version of the diff file to be loaded in parallel easily.

NicolaDM commented 1 year ago

That's really great, these seem to me like amazing features!