yatisht / usher

Ultrafast Sample Placement on Existing Trees
MIT License
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Exclude sequences that contain `/env/` #332

Open corneliusroemer opened 1 year ago

corneliusroemer commented 1 year ago

I would suggest removing sequences that contain /env/, these are not reliable and often contain suspicious reversions to reference.

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https://next.nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice2_genome_test_610cf_910dd0.json?gt=S.486L&label=id:node_7623096