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ycq091044 / SafeDrug

IJCAI2021: Code for SafeDrug, MIMIC data processing, Medical code mapping
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Question-1 #20

Closed Harry-KIT closed 1 year ago

Harry-KIT commented 1 year ago

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Hi @ycq091044, well-done! I am try to do data processing but different result with that you showed. Can you tell me what i did wrong?

ycq091044 commented 1 year ago

Hi @Harry-KIT, thanks for letting us know. I just created a new machine, download all the files, and tried again. The script works file. I can copy my results here.

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From your results, the number of patients, procedures, medication, and diagnosis codes is significantly less. Did you make any local changes?

Harry-KIT commented 1 year ago

Hi @ycq091044, thank you for your reply. I think error is with csv files that i used. i mean that you mentioned to download mimic datasets with the certificate. But I downloaded them without certificate directly from the following sites.

1)https://physionet.org/content/mimiciii-demo/1.4/PRESCRIPTIONS.csv 2)https://physionet.org/content/mimiciii-demo/1.4/DIAGNOSES_ICD.csv 3)https://physionet.org/content/mimiciii-demo/1.4/PROCEDURES_ICD.csv

maybe they differ from those that you mentioned?

ycq091044 commented 1 year ago

Aha. You are using "demo" dataset, not the true MIMIC-III, just look at the path name "mimiciii-demo". To get the full dataset, please follow the PhysioNet Instruction and get the certificate.