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yeastrc / proxl-import-plink2

Convert pLink 2.x output to Proxl XML.
Apache License 2.0
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Error with Linker Representation #3

Closed lrschmitt closed 4 years ago

lrschmitt commented 4 years ago

Hi,

I've run through this converter before with the same pLink search parameters I have now. However, I've encountered a new error that I can't figure out. When the program goes to load search parameters, I receive the following error:

Encountered an error during conversion: Did not get ten fields in linker representation: K Q -17.027 -17.027 -17.027 -17.027 N(-1)H(-3) N(-1)H(-3) 0 0 0

As I said, I have run this converter with these identical search parameters before and this linker posed no issues. The only change is that we have updated to pLink version 2.3.9. If you have any suggestions for trouble shooting, they would be much appreciated!

mriffle commented 4 years ago

Hi, thanks for letting us know. I suspect you're right about the new version, we'll look into this very soon and get back you.

mriffle commented 4 years ago

@lrschmitt I've put v1.4.0 of the converter here: https://github.com/yeastrc/proxl-import-plink2/releases Please let me know if this continues to give you problems!

lrschmitt commented 4 years ago

Looks like this fixed my problems, thank you so much for the quick reply and assistance!