search

yeatmanlab / pyAFQ

Automated Fiber Quantification ... in Python
http://yeatmanlab.github.io/pyAFQ/
BSD 2-Clause "Simplified" License
56 stars 34 forks source link

[ENH] Seeding on the white matter-gray mattter interface #1096

Open 36000 opened 8 months ago

36000 commented 8 months ago

Here is a first attempt at seeding in the gray matter white matter interface using hidden Markov Random Field models (as implemented in DIPY) on slightly modified anisotropic power maps (no T1 needed). I also set this as the default seeding to see which tests it would throw

image image

https://github.com/yeatmanlab/pyAFQ/assets/9562159/cb448ceb-641b-4ff1-b527-c3e9b74bee45

There are some other minor bug fixes in here: Fix IFOF color scheme Throw warning and exit in apply_cmd_to_afq_derivs if you are trying to clobber() a directory that doesnt exist yet

36000 commented 6 months ago

Should consider trying this instead: https://github.com/yeatmanlab/pyAFQ/issues/418

36000 commented 5 months ago

Or use #1129