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yeatmanlab / pyAFQ

Automated Fiber Quantification ... in Python
http://yeatmanlab.github.io/pyAFQ/
BSD 2-Clause "Simplified" License
53 stars 34 forks source link

Use nitransforms for spatial transformations #264

Open arokem opened 4 years ago

arokem commented 4 years ago

See this notebook for concepts and API: https://github.com/poldracklab/nitransforms/blob/master/docs/notebooks/NiTransforms%20-%20ISBI%202020.ipynb

arokem commented 4 years ago

And use the x5 file format therein to store the transforms that are generated. I believe this covers both the affine transform and the non-linear transforms that are currently stored as niftis

arokem commented 3 years ago

Make it so that you can accept registrations and warps created by other pipelines (e.g., qsiprep)