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yechengxi
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DBG2OLC
A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
GNU General Public License v3.0
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Empty sequence loaded. It looks like you have messed up the data. Assembly finished.
#80
chris-dumigan
closed
2 years ago
1
can dbg2olc restarts at where it fails
#79
yuhuang-genomics
opened
3 years ago
0
Is it ContigTh or ContigCovTh?
#78
shelkmike
closed
3 years ago
1
FreeSparseKmerGraph 出现coredump
#77
shuleyu
opened
3 years ago
0
Error! Maximal alignment length reached. max_len: 250
#76
ZhangZhenmiao
closed
3 years ago
2
Sparc always uses 64 CPU threads
#75
shelkmike
opened
3 years ago
0
0 reads loaded -> floating point exception
#74
Jorisvansteenbrugge
opened
3 years ago
3
How to use paired-end reads (R1 and R2) in SparseAssembler
#73
khaled8523
closed
3 years ago
3
Smaller consensus.
#72
Yuma248
closed
4 years ago
1
segfault
#71
Aphrix
closed
3 years ago
1
Update split_and_run_sparc.path.sh
#70
pdimens
closed
4 years ago
0
Overlap and Layout Step
#69
shanewidanagama
closed
4 years ago
1
Create LICENSE
#68
yechengxi
closed
4 years ago
0
merging of final backbone contigs to illumina assembly
#67
pradeepphule
closed
4 years ago
1
Floating point exception (core dumped)
#66
baizixiansheng
closed
4 years ago
1
Just give you some suggestions!
#65
yueyuanliu
closed
4 years ago
1
No release management?
#64
cmeesters
closed
4 years ago
2
Empty sequence loaded. It looks like you have messed up the data.
#63
pgaiero
closed
4 years ago
1
Update split_and_run_sparc.path.sh
#62
pdimens
closed
4 years ago
0
Update split_and_run_sparc.path.sh
#61
pdimens
closed
5 years ago
0
Linked reads + PacBio reads
#60
francicco
closed
5 years ago
1
Update split_and_run_pbdagcon.sh
#59
pdimens
closed
5 years ago
0
Update split_and_run_pbdagcon.path.sh
#58
pdimens
closed
5 years ago
0
segmentation fault
#57
jaworskicoline
closed
5 years ago
5
settings for 10x and 7x coverage
#56
mictadlo
closed
5 years ago
0
Empty sequence loaded. It looks like you have messed up the data.
#55
helaersr
closed
5 years ago
3
Small contigs and slurm_script: Floating point exception
#54
LironShv
closed
5 years ago
1
Segmentation fault with large genome
#53
dgavr
closed
5 years ago
2
Step1 with illumina reads of different insert size ?
#52
ptranvan
closed
5 years ago
1
improvements and minor bugfixes
#51
schellt
closed
5 years ago
0
sparse assembly on longest illumina paired reads
#50
olechnwin
closed
5 years ago
8
Segmentation fault (core dumped) when analyzing reads
#49
jmodlis
closed
5 years ago
4
Consensus step: using blasr and Sparc without the scrip split_and_run_sparc.py
#48
icruz1989
closed
5 years ago
0
Core dumped
#47
pdimens
closed
6 years ago
7
Racon vs sparc
#46
mictadlo
closed
5 years ago
0
Consensus not working
#45
Saillantslab
closed
6 years ago
5
error correction of pacbio reads
#44
nm100
closed
6 years ago
1
478 Floating point exception
#43
jazberna1
closed
6 years ago
1
Open and close each file i.s.o. leaving them all open
#42
swarris
closed
6 years ago
1
no more ulimit necessary
#41
swarris
closed
6 years ago
2
How DBG2OLC deals heterozygosity?
#40
uceleste
closed
6 years ago
2
Forgotten semi-colon in Create_Local_Contig_Kmer_Index(GraphConstructi…
#39
bredeson
closed
6 years ago
0
Fix for issue #31
#38
bredeson
closed
6 years ago
1
larger genome size
#37
hermeseduardo
closed
6 years ago
9
Any information for Hardware requirements and expected run times for large genomes hybrid assembly?
#36
52teth
closed
6 years ago
2
Zero Unique Matching Kmers
#35
GWheelerEB
closed
6 years ago
1
Choose the best assembly
#34
uceleste
closed
6 years ago
2
DBG2OLC parameters for huge dataset of PacBio
#33
uceleste
closed
7 years ago
2
combining ReadsInfoFrom_* fails
#32
janvanoeveren
closed
7 years ago
5
Create_Local_Contig_Kmer_Index(GraphConstruction.h) SegFault
#31
bredeson
closed
7 years ago
7
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