Open ssssyq1123 opened 6 months ago
utility
can generate plots only for the sepcific regions if providing -R
option (as descripted in #4)out of memory
also happens to me usually. I do think I need to solve this problem some day. And good suggestions, I have added the funcion of logging in the latest version of GCI (v0.4), I wish that would help you... Thanks for quick reply and update!
Could you please provide a separate script for GCI score calculation of specific region like the plot script in the utility? Then I have not to run the whole process again since I got the depth.gz already~
Yeah that's a good suggestion. Now in the latest commit, I created a file named GCI_score.py
in the folder utility
, which can be used to compute GCI score as in GCI.py and all you need is to provide the depth.gz file you got.
Cool tool! I’m interested in specific regions, but I’m running into some issues with GCI.