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yeeus / GCI

A program for assessing the T2T genome continuity
MIT License
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a summarized GCI score for multiple specific regions #7

Closed dongyawu closed 1 month ago

dongyawu commented 7 months ago

Hi, Quanyu! thanks for your efforts to improve this nice tool. I am evaluating the assembly quality of centromeres and GCI can generate the score of a specific region. how about generating a summarized GCI score for multiple regions? just like a whole-genome score?

yeeus commented 7 months ago

Now, in the latest beta version (commit 9a15e91), you can get a summarized GCI score in the file named ${prefix}.regions.gci if providing regions file with -R

yeeus commented 1 month ago

I will close this issue due to long time of inactivity.