Template Reaction Node disappears after duplicating pathway

[GoogleCodeExporter]

Use local queries to generate a pathway. When you duplicate it, template 
reaction nodes are not present in the duplicated pathway. 
With pathways generated by PC L3 queries, they disappear from duplicated 
pathway after updating it.

Original issue reported on code.google.com by mervecak...@gmail.com on 21 Sep 2012 at 11:32

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It is not happening to me. I am querying downstream of FOXA1 and duplicating 
the pathway, and no problems. Template reactions are there. Nothing missing. 
Can you please re-check this issue and give more specific instructions to 
duplicate if still exists?

Original comment by ozgunba...@gmail.com on 2 Oct 2012 at 8:04

[GoogleCodeExporter]

I still have this problem. Below are the steps I used to get it:
- Load "Regulation of Telomerase" from sample files.
- Use Local Query to get 1-level neighborhood(both) of TERT_HUMAN.
- Duplicate the result
In the duplicated pathway, template reaction nodes are missing. 

I have also observed this in another situation:
- Query 1-level neighborhood(both) of CLOCK via PC L3 neighborhood query.
- Duplicate the result.
- Update the duplicated pathway.
After updating, template reactions go missing in the duplicated pathway whereas 
they are still visible in the original one. 

Original comment by mervecak...@gmail.com on 3 Oct 2012 at 1:07

[GoogleCodeExporter]

This was due to missing "else" blocks after adding template reactions. I needed 
to add two of them. Probably indicates some bad design choice. Should be fixed 
now.

Original comment by ozgunba...@gmail.com on 4 Oct 2012 at 10:55

[GoogleCodeExporter]

Original comment by mervecak...@gmail.com on 8 Oct 2012 at 8:31

• Changed state: Verified