Should make the generation of the rlog object an option that can be turned off for projects
with a lot of samples where it takes a long time to run.
In my prelim test with 151 samples of p22321_Malika, it's taking > 20 min as of now.
@gktharp1
I like this idea, but will need to update the analysis template code too to check for the RLD assay once it gets to heatmap stage.
There might be some stuff with background processes we could work on. Maybe, after the QC script is ran, and after the first pass rendering of the format file, it calls a chunk that runs the RLD process in the background. Have to think about how that can be saved to the object and doesn't overwrite it incase the user is doing interactive analysis with the Analysis object while the RLD runs.
I like this idea, but will need to update the analysis template code too to check for the RLD assay once it gets to heatmap stage.
There might be some stuff with background processes we could work on. Maybe, after the QC script is ran, and after the first pass rendering of the format file, it calls a chunk that runs the RLD process in the background. Have to think about how that can be saved to the object and doesn't overwrite it incase the user is doing interactive analysis with the Analysis object while the RLD runs.