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yerkes-gencore / gencoreBulk

An R package to facilitate bulk RNAseq analyses at the ENPRC Genomics Core
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Convert seurat2 pb #26

Open micahpf opened 7 months ago

micahpf commented 7 months ago

Adding convertSeurat2Pb function (formerly createPBobj). And updated the DESCRIPTION based on suggestions in https://r-pkgs.org/description.html#sec-description-title-and-description

derrik-gratz commented 7 months ago

You may be interested in this function from Seurat

https://satijalab.org/seurat/reference/aggregateexpression

micahpf commented 7 months ago

You may be interested in this function from Seurat

https://satijalab.org/seurat/reference/aggregateexpression

Yeah I new about this but I don't find the output very helpful honestly. convertSeurat2Pb is essentially a wrapper for edgeR::Seurat2PB with some added features to make it more useful for my recent changes to bulk_template, which are now also adapted for scRNAseq_template in the pb pull request.