yerkes-gencore / scRNAseq_template

Template for ENPRC Genomics Core single cell RNAseq projects
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Separate file/workflow for soupx #10

Open derrik-gratz opened 1 month ago

derrik-gratz commented 1 month ago

Should be fine as a separate file since it's upstream of any actual work in Seurat. Would allow you to play around with priors and correction more, then establish which matrix to move forward with for object generation. You would just save out the soup channel objects and read those into the next script