paired reads have different names: "0", "2"

yezhengSTAT / FreeHiC

FreeHi-C pipeline for high fidelity Hi-C data simulation.

MIT License

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Open DayTimeMouse opened 7 months ago

DayTimeMouse commented 7 months ago

Hi,

The simulated HiC paired reads have different names, whic show in the below picture. 1712480461626 1712480413438

I hope you can help me to sovle this problem.

Thanks a lot!

yezhengSTAT commented 7 months ago

That is weird indeed. Did you use any parallel approach? Have you tried the demo data and encounter similar issue?

Thanks, Ye