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yhoogstrate / dr-disco

:mask::loudspeaker: Dr. Disco: detecting genomic breakpoints of fusion transcripts in random hexamer RNA-seq data
GNU General Public License v3.0
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Updates classification #115

Closed yhoogstrate closed 6 years ago

yhoogstrate commented 6 years ago 

-------------------------------------- dr-disco 0.16.1
|          |    true    |    false   |
--------------------------------------
| positive |        121 |          4 | 
--------------------------------------
| negative |         47 |         11 | 
--------------------------------------

-------------------------------------- FFPE T-ERG TP's: 0SH, 0S5, 0SF & 11U (2x)
|          |    true    |    false   |
--------------------------------------
| positive |        121 |          4 | 
--------------------------------------
| negative |         47 |         11 | 
--------------------------------------

-------------------------------------- updated filters (+4 tp) and new tests
|          |    true    |    false   |
--------------------------------------
| positive |        125 |          4 | 
--------------------------------------
| negative |         47 |         20 | 
--------------------------------------

-------------------------------------- adapted filter (+1 fn: s072 T2E) and found as a result two new true positives
|          |    true    |    false   |
--------------------------------------
| positive |        128 |          4 | 
--------------------------------------
| negative |         47 |         19 | 
--------------------------------------

-------------------------------------- small adaptation to 'n_disco ..>..'
|          |    true    |    false   |
--------------------------------------
| positive |        130 |          4 | 
--------------------------------------
| negative |         47 |         17 | 
--------------------------------------

-------------------------------------- FP 053 t2e hg38
|          |    true    |    false   |
--------------------------------------
| positive |        130 |          4 | 
--------------------------------------
| negative |         47 |         18 | 
--------------------------------------

-------------------------------------- :)
|          |    true    |    false   |
--------------------------------------
| positive |        131 |          4 | 
--------------------------------------
| negative |         47 |         17 | 
--------------------------------------