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yhoogstrate
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flaimapper
:honeybee: Fragment Location Annotation Identification Mapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data
GNU General Public License v3.0
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Adds new argument
#26
yhoogstrate
opened
6 years ago
2
update readme to py3/flaimapper3
#25
yhoogstrate
closed
6 years ago
0
Length difference of overlaping fragments with same end
#24
luidale
opened
6 years ago
3
Multi length per position
#23
yhoogstrate
closed
6 years ago
1
Fixed bug that caused non unique uids
#22
yhoogstrate
closed
7 years ago
0
improves behavior on suboptimal results
#21
yhoogstrate
closed
7 years ago
0
Update MaskedRegion.py
#20
yhoogstrate
closed
7 years ago
0
Use `xrange` over `range` to improve both mem and cpu consumption
#19
yhoogstrate
closed
8 years ago
0
Fixes a parallelization bug in pysam (#17)
#18
yhoogstrate
closed
8 years ago
0
Pysam has a parallelization bug
#17
yhoogstrate
closed
8 years ago
0
Catches pysam Exception in rare alignment conditions pt. 2
#16
yhoogstrate
closed
8 years ago
0
Catches pysam Exception in rare alignment conditions
#15
yhoogstrate
closed
8 years ago
0
Traceback of fragments seems to be unweighted / not picking up the penalty properly
#14
yhoogstrate
closed
7 years ago
0
Resolving vector overexpansion problem
#13
yhoogstrate
closed
8 years ago
0
Refactorization
#12
yhoogstrate
closed
8 years ago
0
Using tuplse instead of obsolete class/Namespace for the sequencing R…
#11
yhoogstrate
closed
8 years ago
0
Clean-ups and minor memory improvements
#10
yhoogstrate
closed
8 years ago
0
Improve memory efficiency
#9
yhoogstrate
closed
8 years ago
1
Deployment pip fixes and unaligned reads fix
#8
yhoogstrate
closed
8 years ago
0
v2.1.1 - should fix pypi/pip-specific deployment issue
#7
yhoogstrate
closed
8 years ago
0
Reduction of memory footprint by rewriting a sparser median estimation
#6
yhoogstrate
closed
8 years ago
0
Refactoring to get rid of mask files
#5
yhoogstrate
closed
8 years ago
0
Very weird mistake in a particular sequence
#4
yhoogstrate
closed
8 years ago
0
GTF or GFF3 as output format
#3
yhoogstrate
closed
9 years ago
0
"Full genome alignment"-type analysis has trimmed output
#2
yhoogstrate
closed
9 years ago
1
indexing Fa file results in a warning in STDERR
#1
yhoogstrate
closed
9 years ago
2