Porting to Python 3 - Githubissues

yhoogstrate / fuma

:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes

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Porting to Python 3 #35

Closed bow closed 7 years ago

bow commented 8 years ago

Hi @yhoogstrate,

I was wondering if there are any plans on porting this to make it at least Python 3 compatible? I'm planning to use this in a soon-to-be released pipeline, but a portion of the pipeline that uses Python is on Python 3.

If you need help, I can also take a look :).

yhoogstrate commented 8 years ago

Hey @bow, thanks! I've been struggling with the same issue, but I'm stuck because HTSeq is not python3 compatible: https://github.com/simon-anders/htseq/pull/9 - If you can help me on that, we're pretty close to having FuMa in Py3

b.t.w conda has a very useful tool for conversion called 2to3.

yhoogstrate commented 7 years ago

It seems there will be no version of HTSeq dat will be compatible with both python2 and python3 and I am not considering porting it to python3 with losing compatibilty with python2.