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yhoogstrate / fuma

:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes
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Pizzly support #41

Closed mblue9 closed 6 years ago

mblue9 commented 7 years ago

Hi Youri,

As you suggested in IUC Gitter, I'm creating an issue to request FuMa support for Pizzly input.

Attached is an example of Pizzly output.

Thanks a lot!

Maria

out.fusions.tab.txt

mblue9 commented 7 years ago

Pizzly also outputs a fasta file, example attached here. out.fusions.fasta.txt

yhoogstrate commented 7 years ago

Hi Maria,

This is going to be hard as it does not provide genomic locations.. That's the input FuMa needs. Do you use random hexamer or poly-A RNA-seq data?