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yihui / knitr

A general-purpose tool for dynamic report generation in R
https://yihui.org/knitr/
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?sd doesn't parse correctly: tries to create a folder #89

Closed bryanhanson closed 12 years ago

bryanhanson commented 12 years ago

I'm converting a lot of my documents and here's an issue I found:

\documentclass[10pt]{article}
\begin{document}

Reading \texttt{R} help files take some getting used to, but the information you need is there, somewhere!

<<  Chunk6, echo = TRUE, eval = FALSE >>=
?sd # gives help on the function "sd"
@

\end{document}

Produces the following error:

knit("/Users/bryanhanson/Desktop/KnitrProblem.Rnw") |>>>>>>>>>>>>>>>>>>>>>> | 33% |>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | 67% Chunk6: echo=TRUE, eval=FALSE

Error in parser(file, encoding = encoding) : /var/folders/f4/5smpz_448xj3_l0059_zm20h0000gn/T//Rtmp9dCN6I/file34ac699a9a82:2:0 unexpected end of input

This is with:

sessionInfo() R version 2.14.1 (2011-12-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] graphics grDevices datasets stats tools utils methods base

other attached packages: [1] knitr_0.1.1 devtools_0.5.1 HiveR_0.2-1 ChemoSpec_1.50-1 [5] FuncMap_1.0-1 mvbutils_2.5.101 sos_1.3-1 brew_1.0-6

loaded via a namespace (and not attached): [1] amap_0.8-7 baseline_1.0-1 bipartite_1.17 chemometrics_1.3.7 [5] class_7.3-3 codetools_0.2-8 digest_0.5.1 e1071_1.6
[9] evaluate_0.4 formatR_0.3-4 grid_2.14.1 highlight_0.3.1
[13] igraph_0.5.5-4 lattice_0.20-0 MASS_7.3-16 mclust_3.4.10
[17] mvoutlier_1.9.4 mvtnorm_0.9-9991 nnet_7.3-1 parser_0.0-14
[21] pcaPP_1.9-44 pls_2.3-0 plyr_1.6 R.oo_1.8.3
[25] R.utils_1.9.6 RColorBrewer_1.0-5 Rcpp_0.9.7 RCurl_1.8-0
[29] RFOC_2.0-02 rgl_0.92.798 robustbase_0.8-0 rpart_3.1-50
[33] seriation_1.0-6 sna_2.2-0 som_0.3-5 SparseM_0.91
[37] splines_2.14.1 stringr_0.6 survival_2.36-10 tnet_3.0.5
[41] TSP_1.0-6 vegan_2.0-2 xtable_1.6-0

yihui commented 12 years ago

This should be an issue with the formatR package: it is unable to format this line correctly, so you should use tidy=FALSE in this case, or use help().

bryanhanson commented 12 years ago

Thanks! On Jan 18, 2012, at 3:22 PM, Yihui Xie wrote:

This should be an issue with the formatR package: it is unable to format this line correctly, so you should use tidy=FALSE in this case.

Reply to this email directly or view it on GitHub: https://github.com/yihui/knitr/issues/89#issuecomment-3552458

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