Open fconstancias opened 2 years ago
@fconstancias Thanks for your question. Argument confounders
is used to specify the confouding variables. e.g.
run_ancom(ps, group = "Enterotype", confounders = "Gender")
Hi @yiluheihei,
Thanks for your answer. From the ANCOM package the approach can handle both:
adj_formula: Character string representing the formula for adjustment (see example)
-> confoundersrand_formula: Character string representing the formula for random effects in lme. For details, see ?lme
Any way to specify both in microbiomeMarker::run_ancom()
?
Thanks
Hi @yiluheihei,
Thanks for your answer. From the ANCOM package the approach can handle both:
adj_formula: Character string representing the formula for adjustment (see example)
-> confoundersrand_formula: Character string representing the formula for random effects in lme. For details, see ?lme
Any way to specify both in
microbiomeMarker::run_ancom()
?Thanks
Currently, microbiomMarker only supports adjustment formula by setting the argument confounders
.
Thanks for developping this tool.
Some of the methods supports mixed model effects e.g., ANCOM.
How is it possible to specify the random factor using microbiomeMarker?
I tried the following:
Which led to the following error:
Thanks