split-seq for single nucleus data

yjzhang / split-seq-pipeline

MIT License

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split-seq for single nucleus data #29

Open x1han opened 1 year ago

x1han commented 1 year ago

hi,

I am working on the dataset GSE119212, which are single-nucleus data by split-seq. I am wondering if there is a paramter like 'include_introns' in cellranger for snRNA-seq data with this split-seq-pipeline?

thanks!