Closed ptnaimelmm closed 3 years ago
RegTools extract these splice sites from the human reference genome FASTA file directly. Here shows the answers. https://bioinformatics.stackexchange.com/questions/225/uppercase-vs-lowercase-letters-in-reference-genome
Hi, What's the difference between lower cases and the upper cases in splice_site column in janno file? Take GT-AG as an example, gt-ag gt-aG gt-Ag gt-AG gT-ag gT-AG Gt-ag Gt-aG Gt-AG GT-ag GT-aG GT-Ag GT-AG
Thanks