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ylab-hi / ScanExitron

A computational workflow for exitron splicing identification
MIT License
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IndexError: list index out of range #6

Closed MengyuanLyu closed 3 years ago

MengyuanLyu commented 3 years ago

Hello, I am trying to use ScanExitron. However, it showed the error.

Junctions intersect with CDS Junctions intersect with CDS finished! Traceback (most recent call last): File "/root/miniconda3/envs/scanexitron/bin/ScanExitron-1.1-beta/ScanExitron.py", line 387, in main() File "/root/miniconda3/envs/scanexitron/bin/ScanExitron-1.1-beta/ScanExitron.py", line 379, in main src_exitron_file, position_bed_file = junction_overlap_CDS_to_position_BED(janno_file, ref=args.ref) File "/root/miniconda3/envs/scanexitron/bin/ScanExitron-1.1-beta/ScanExitron.py", line 209, in junction_overlap_CDS_to_position_BED attr = get_value_by_key(l[16], delimiter=' ') IndexError: list index out of range

I have tried to revise my index, but it did not work. Hope your guidance！ Thank you!

dolittle007 commented 3 years ago

Thank you for your interest in using ScanExitron. I have removed the get_value_by_key function in 1.3beta, please install the latest version. I have changed the way of generating the CDS bed file, please change this file accordingly, as well.

MengyuanLyu commented 3 years ago

Thank you for your interest in using ScanExitron. I have removed the get_value_by_key function in 1.3beta, please install the latest version. I have changed the way of generating the CDS bed file, please change this file accordingly, as well.

OK！Thank you!