search

ylab-hi / ScanExitron

A computational workflow for exitron splicing identification
MIT License
12 stars 6 forks source link

line 215: length-1 #8

Closed zyh4482 closed 2 years ago

zyh4482 commented 2 years ago

Hi. The width of a range is usually calculated by end - start in 0-start half-open system. May I ask why the exitron length in scanExitron.py line215 is called by length-1 ?

dolittle007 commented 2 years ago

ScanExitron makes use of Regtools called splicing junctions as input. Regtools used 1bp adjacent to the junction as the start and end. So Scanexitron has to fix this problem. You may load the BAM file into IGV to check the junctions called by Regtools in the corresponding janno file.

zyh4482 commented 2 years ago

Thank you!