vep_install --> perl INSTALL.pl

ylab-hi / ScanNeo

A pipeline for identifying indel derived neoantigens using RNA-Seq data

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Closed serge2016 closed 2 years ago

serge2016 commented 2 years ago

I can't find vep_install command or binary in the vep's repo. I suppose, that now we should use perl INSTALL.pl instead here and later: https://github.com/ylab-hi/ScanNeo/blob/56fe1d9f08d4422bbf01343cb4f7081aa870a8dd/README.md?plain=1#L94

sandain commented 2 years ago

The vep_install comes from the bioconda recipe:

(note that vep_install is renamed from INSTALL.pl to avoid having generic script names in the PATH)

serge2016 commented 2 years ago

@sandain ok, sorry. I prefer to use native installation in docker environment...