I got a warning message when I performed neoantigen prediction. It said Warning: There was a mismatch between the actual wildtype amino acid and the expected amino acid. Did you use the same reference build version for VEP that you used for creating the VCF? What reference version did you use to build VEP_plugins Wildtype.pm? What do you think I should do to solve this problem? Thanks.
Hi,
I got a warning message when I performed neoantigen prediction. It said Warning: There was a mismatch between the actual wildtype amino acid and the expected amino acid. Did you use the same reference build version for VEP that you used for creating the VCF? What reference version did you use to build VEP_plugins Wildtype.pm? What do you think I should do to solve this problem? Thanks.
Best regards