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ylab-hi / ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources
MIT License
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Add routine to catch missing input data on filesystem #14

Open riasc opened 4 months ago

riasc commented 4 months ago

Missing input data causes:

MissingInputException in rule fastqc_forward in file /projects/b1171/sej9799/GBM_analysis/ScanNeo2/workflow/rules/preproc.smk, line 35: Missing input files for rule fastqc_forward: output: results/SRR8281248/rnaseq/qualitycontrol/rna_tumor_R1_fastqc_raw.html, results/SRR8281248/rnaseq/qualitycontrol/rna_tumor_R1_fastqc_raw.zip wildcards: sample=SRR8281248, seqtype=rnaseq, group=rna_tumor affected files: ../GBM/SRR8281248_1.fastq

Should be caught differently