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ylab-hi / ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources
MIT License
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add cpus to spladder #19

Closed nttg8100 closed 4 months ago

nttg8100 commented 4 months ago

When I ran spladder in the altsplicing task. It is lacked of parallel option that slows the process. https://github.com/ylab-hi/ScanNeo2/blob/main/workflow/rules/altsplicing.smk#L17C1-L24C39 Just add --parallel <cpus>

riasc commented 4 months ago

Hey @nttg8100, Thanks for reporting this. I thought this only works for test mode. But this would make things a lot faster... Will change this these days.

Cheers

riasc commented 4 months ago

Resolved in #20 and ScanNeo2 v0.2.4

Thanks