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ylab-hi / ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources
MIT License
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Where I can download the required argument peptides #24

Closed nttg8100 closed 4 months ago

nttg8100 commented 4 months ago

I want to use the compile.py module. However, in the repo, I can not found the description that illustrate where I can download the peptide.fasta https://github.com/ylab-hi/ScanNeo2/blob/52a3818ec3189af502f18eba6b6a1a69b9b3a8c3/workflow/rules/prioritization.smk#L58C4-L58C43

riasc commented 4 months ago

Hi again,

do I understand you correctly you want to use it outside of the workflow? The peptide is basically the ensemble peptide sequence as defined here: https://github.com/ylab-hi/ScanNeo2/blob/52a3818ec3189af502f18eba6b6a1a69b9b3a8c3/workflow/rules/ref.smk#L20

nttg8100 commented 4 months ago

Thank your for your support.