can i use targeted sequencing? rather than WES..

ylab-hi / ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

MIT License

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can i use targeted sequencing? rather than WES.. #32

Closed ilovegreentea closed 3 months ago

ilovegreentea commented 3 months ago

Is it possible? Can targeted sequencing data be input file?

we have WTS & targeted sequencing file.. please let me know can i use this...

Best,

riasc commented 3 months ago

Hi, Thanks for asking this. Yes, the workflow should also work on WGS/WTS and any other targeting sequencing. However, depending on your interest, it will (currently) only consider coding regions and nothing outside of the exome.

Best