search

ymli39 / ACEnet-for-Neuroanatomy-Segmentation

ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation
MIT License
16 stars 4 forks source link

ACEnet issues #2

Closed chunxia0202 closed 3 years ago

chunxia0202 commented 3 years ago

hello,I now think there might be something wrong with my preprocessing.My pretreatment process is as follows, do you think it is correct. 1:Use freesurfer to preprocess traing-images,traing-labels,testing-images,testing-labels into 256256256,command is mri_convert --crop 128 128 134 input output; 2:Use the recon-all command to generate brainmask; 3:use ./data_utils/utils.py function convertTonpy() to convert data and brainmasks to numpy; 4:use ./data_utils/utils.py function remaplabels() to generate corresponding labels.

ymli39 commented 3 years ago

My collaborator did the preprocessing step (step1, 2), my work in primarily based on network design and model training. However, I remember we used mri_convert, but not crop. The rest looks good to me.