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ymli39 / DeepSEED-3D-ConvNets-for-Pulmonary-Nodule-Detection

DeepSEED: 3D Squeeze-and-Excitation Encoder-Decoder ConvNets for Pulmonary Nodule Detection
MIT License
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Cannot find preprocessed labels #30

Closed movchinar closed 1 year ago

movchinar commented 3 years ago

After preparing LUNA dataset I got _clean.npy, _label.npy for training, and _spacing.npy, _extendbox.npy, _origin.npy data. But while running train_detector_se.py from luna_detector directory I am getting following error:

Traceback (most recent call last): File "train_detector_se.py", line 338, in main() File "train_detector_se.py", line 113, in main split_comber=split_comber) File "/home/movchinar/home/movchinar/DeepSEED-3D-ConvNets-for-Pulmonary-Nodule-Detection/luna_detector/data_loader.py", line 56, in init l = np.load(os.path.join(data_dir, '%s_label.npy' %idx)) File "/home/movchinar/.local/lib/python3.6/site-packages/numpy/lib/npyio.py", line 416, in load fid = stack.enter_context(open(os_fspath(file), "rb")) FileNotFoundError: [Errno 2] No such file or directory: '/fast-drive/movchinar/LUNA/prepross/668_label.npy'

In fact, there is no data with a 668 index. Could you guide please the algo which builds indexes.

XYX1998 commented 3 years ago

You dont have the entire dataset . Got to be patient! the dataset is so huge.

ymli39 commented 1 year ago

Hi I renamed all files starts from 0 to 888. You might want to check if the label name matches the renamed labels.