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yoann-dufresne / seqdd

GNU Affero General Public License v3.0
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problem reading file of accs with add -f #6

Closed vicLeva closed 1 month ago

vicLeva commented 1 month ago 
seqdd init --register-location dataset_pangenome_salmonella/
cd dataset_pangenome_salmonella

then

seqdd add -s ena -a SAMD00000344 SAMD00000345 SAMD00000355 -t /WORKS/vlevallois/tmp --register-location . gives [2024-10-03 11:48:22,426 - INFO] 3 accessions added to the register

while

seqdd add -s ena -f expe_accessions.txt -t /WORKS/vlevallois/tmp --register-location . gives [2024-10-03 11:49:33,670 - INFO] 0 accessions added to the register and no ena.txt is created

vicLeva commented 1 month ago 
cat expe_accessions.txt 
SAMD00000344
SAMD00000345
SAMD00000355
yoann-dufresne commented 1 month ago

Fixed on dev