Task 3a. Add illumina annotation

yocra3 / epimutacions

Package to detect epimutations from DNA methylation data

Other

1 stars 2 forks source link

Task 3a. Add illumina annotation #36

Open yocra3 opened 3 years ago

yocra3 commented 3 years ago

Add annotation from Illumina package to Epimutations. Some interesting fields to be added are:

Gene
Gene position
CpG Island

yocra3 commented 3 years ago

This version of the code is thought for using EPIC annotation. Should we make it compatible for 450K array?

yocra3 commented 3 years ago

Potential improvement: clean Illumina's gene annotation.

Each CpGs is mapped independently to all transcripts in a gene. Thus, a CpG can be annotated several times to the same gene, even to the same gene position. This can be simplified.