Library problems

[ag83uk]

Hi

I have downloaded Olivia and followed all the instruction.

But I have still some problems with some libraries

I am currently using Macbook Retina mid 2014 macOS High Sierra 10.13.4

I tried to look for solution but still not solved the problem

Thanks

Best

Angelo

[yokochi47]

Dear Angelo,

Thank you for your notice. Could you please post error message displayed on the terminal to find out which libraries were missing?

Best regards,

Masashi

[ag83uk]

HI Masashi,

thanks for the help

Application Specific Information: dyld: launch, loading dependent libraries DYLD_LIBRARY_PATH=/Users/AngeloGallo/Desktop/Olivia-master/olivia_home/libhpdf-2.3.0RC2/src/.libs:/usr/local/lib:/Users/AngeloGallo/Desktop/Olivia-master/olivia_home/libsvm-3.22:/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A:/Users/AngeloGallo/Desktop/Olivia-master/olivia_home/xbae-4.60.4/src/.libs:/Users/AngeloGallo/Desktop/Olivia-master/olivia_home/motif-2.3.4/lib/Xm/.libs

Dyld Error Message: Symbol not found: __cg_jpeg_resync_to_restart Referenced from: /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO Expected in: /usr/local/lib/libJPEG.dylib in /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO

[ag83uk]

I have also got this message while running the Olivia

Local Host: angelo.local, Local IP Address: 127.0.0.1

Couldn't get environment variable $NMRBIN.

[yokochi47]

Thank you for your post.

It seems the same issue occured in other 3rd party UNIX command: https://stackoverflow.com/questions/17643509/conflict-between-dynamic-linking-priority-in-osx

As descrived above, you need to change priolity by insertion of the next code in head of ~/.bashrc or ~/.bash_profile: export DYLD_LIBRARY_PATH=/usr/lib/:$DYLD_LIBRARY_PATH

or re-run brew command to install libjpeg and re-link libjpeg: brew install libjpeg && brew unlink libjpeg && brew link libjpeg

The "Local Host ***" line is normal output. If you install NMRPipe ahead of installation of Olivia, The "Couldn't get environment variable $NMRBIN" message will disappear.

I hope this will help.

Masashi

[yokochi47]

Hi,

Then, I could reproduce the conflict libraries installed by brew. As descrived stackoverflow, the next solution worked for me.

cd /usr/local/lib; mv libjpeg.dylib libjpeg.dylib.bk; ln -s /System/Library/Frameworks/ImageIO.framework/Resources/libJPEG.dylib libJPEG.dylib

Masashi